:: Synchronizing package databases... build-support-manual downloading... build-support downloading... core-staging downloading... extra-staging downloading... core-testing downloading... core downloading... extra-testing downloading... extra downloading... :: Starting full system upgrade... there is nothing to do ==> Building in chroot for [extra-staging-with-build-support] (i486)... ==> Synchronizing chroot copy [/var/lib/archbuild/extra-staging-with-build-support-i486/root] -> [build]...done ==> Making package: rdkit 2025.03.1-1.0 (Tue Apr 1 23:21:04 2025) ==> Retrieving sources... -> Found rdkit-2025.03.1.tar.gz ==> Validating source files with b2sums... rdkit-2025.03.1.tar.gz ... Passed gpg: Warning: using insecure memory! ==> Appending keys from archlinux32.gpg... gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! ==> Updating trust database... gpg: Warning: using insecure memory! gpg: next trustdb check due at 2025-06-16 ==> Making package: rdkit 2025.03.1-1.0 (Tue Apr 1 23:21:13 2025) ==> Checking runtime dependencies... ==> Installing missing dependencies... resolving dependencies... looking for conflicting packages... warning: dependency cycle detected: warning: harfbuzz will be installed before its freetype2 dependency Packages (33) blas-3.12.1-2.0 cblas-3.12.1-2.0 fontconfig-2:2.16.1-1.0 fribidi-1.0.16-1.0 graphite-1:1.3.14-3.3 harfbuzz-7.1.0-1.0 jbigkit-2.1-8.0 lapack-3.12.1-2.0 lcms2-2.16-1.0 libimagequant-2.17.0-3.0 libjpeg-turbo-3.1.0-1.0 libpng-1.6.47-1.0 libraqm-0.10.2-1.0 libtiff-4.7.0-1.0 libx11-1.8.12-1.0 libxau-1.0.12-1.0 libxcb-1.17.0-1.0 libxdmcp-1.1.5-1.0 libxext-1.3.6-1.0 libxrender-0.9.12-1.0 lzo-2.10-5.1 mpdecimal-4.0.0-2.153 openjpeg2-2.5.3-1.0 pixman-0.44.2-1.0 python-packaging-24.2-3.1 xcb-proto-1.17.0-3.0 xorgproto-2024.1-2.0 boost-libs-1.87.0-3.0 cairo-1.18.2-2.0 freetype2-2.13.3-1.0 python-3.13.2-1.2 python-numpy-2.2.0-1.0 python-pillow-10.3.0-2.2 Total Installed Size: 183.37 MiB :: Proceed with installation? [Y/n] checking keyring... checking package integrity... loading package files... checking for file conflicts... :: Processing package changes... installing boost-libs... Optional dependencies for boost-libs openmpi: for mpi support installing libpng... installing graphite... Optional dependencies for graphite graphite-docs: Documentation installing harfbuzz... Optional dependencies for harfbuzz harfbuzz-utils: utilities installing freetype2... installing fontconfig... Creating fontconfig configuration... Rebuilding fontconfig cache... installing xcb-proto... installing xorgproto... installing libxdmcp... installing libxau... installing libxcb... installing libx11... installing libxext... installing libxrender... installing lzo... installing pixman... installing cairo... installing mpdecimal... installing python... Optional dependencies for python python-setuptools: for building Python packages using tooling that is usually bundled with Python python-pip: for installing Python packages using tooling that is usually bundled with Python python-pipx: for installing Python software not packaged on Arch Linux sqlite: for a default database integration [installed] xz: for lzma [installed] tk: for tkinter installing blas... installing cblas... installing lapack... installing python-numpy... Optional dependencies for python-numpy blas-openblas: faster linear algebra installing python-packaging... installing jbigkit... installing libjpeg-turbo... Optional dependencies for libjpeg-turbo java-runtime>11: for TurboJPEG Java wrapper installing libtiff... Optional dependencies for libtiff freeglut: for using tiffgt installing lcms2... installing fribidi... installing libraqm... installing openjpeg2... installing libimagequant... installing python-pillow... Optional dependencies for python-pillow libwebp: for webp images tk: for the ImageTK module python-olefile: OLE2 file support python-pyqt6: for the ImageQt module :: Running post-transaction hooks... (1/3) Arming ConditionNeedsUpdate... (2/3) Updating fontconfig configuration... (3/3) Updating fontconfig cache... ==> Checking buildtime dependencies... ==> Installing missing dependencies... resolving dependencies... looking for conflicting packages... Packages (14) cppdap-1.58.0-2.0 hicolor-icon-theme-0.18-1.0 jsoncpp-1.9.6-3.0 libuv-1.50.0-1.2 perl-error-0.17029-7.0 perl-mailtools-2.22-1.0 perl-timedate-2.33-7.0 rhash-1.4.4-1.0 boost-1.87.0-3.0 catch2-3.8.0-3.0 cmake-3.30.3-2.1 eigen-3.4.0-2.0 git-2.47.0-1.0 ninja-1.12.1-2.0 Total Installed Size: 286.96 MiB :: Proceed with installation? [Y/n] checking keyring... checking package integrity... loading package files... checking for file conflicts... :: Processing package changes... installing boost... Optional dependencies for boost python: for python bindings [installed] installing catch2... installing cppdap... installing hicolor-icon-theme... installing jsoncpp... Optional dependencies for jsoncpp jsoncpp-doc: documentation installing libuv... installing rhash... installing cmake... Optional dependencies for cmake make: for unix Makefile generator [installed] ninja: for ninja generator [pending] qt6-base: cmake-gui installing eigen... installing perl-error... installing perl-timedate... installing perl-mailtools... installing git... Optional dependencies for git tk: gitk and git gui openssh: ssh transport and crypto perl-libwww: git svn perl-term-readkey: git svn and interactive.singlekey setting perl-io-socket-ssl: git send-email TLS support perl-authen-sasl: git send-email TLS support perl-mediawiki-api: git mediawiki support perl-datetime-format-iso8601: git mediawiki support perl-lwp-protocol-https: git mediawiki https support perl-cgi: gitweb (web interface) support python: git svn & git p4 [installed] subversion: git svn org.freedesktop.secrets: keyring credential helper libsecret: libsecret credential helper [installed] installing ninja... :: Running post-transaction hooks... (1/4) Creating system user accounts... /usr/lib/sysusers.d/uuidd.conf:1: Unknown modifier 'u!'. Creating group 'git' with GID 972. Creating user 'git' (git daemon user) with UID 972 and GID 972. (2/4) Reloading system manager configuration... Skipped: Current root is not booted. (3/4) Arming ConditionNeedsUpdate... (4/4) Checking for old perl modules... ==> Retrieving sources... -> Found rdkit-2025.03.1.tar.gz ==> WARNING: Skipping all source file integrity checks. ==> Extracting sources... -> Extracting rdkit-2025.03.1.tar.gz with bsdtar ==> Starting build()... -- The C compiler identification is GNU 14.2.1 -- The CXX compiler identification is GNU 14.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Python3 (missing: Python3_NumPy_INCLUDE_DIRS NumPy) (found version "3.13.2") CMake Error at /usr/lib/cmake/Boost-1.87.0/BoostConfig.cmake:141 (find_package): Found package configuration file: /usr/lib/cmake/boost_numpy-1.87.0/boost_numpy-config.cmake but it set boost_numpy_FOUND to FALSE so package "boost_numpy" is considered to be NOT FOUND. Reason given by package: No suitable build variant has been found. Call Stack (most recent call first): /usr/lib/cmake/Boost-1.87.0/BoostConfig.cmake:262 (boost_find_component) CMakeLists.txt:325 (find_package) -- Configuring incomplete, errors occurred! ==> ERROR: A failure occurred in build(). Aborting... ==> ERROR: Build failed, check /var/lib/archbuild/extra-staging-with-build-support-i486/build/build used straw: :with_build_support:without_check: build@euronuc-i486