:: Synchronizing package databases... build-support-manual downloading... build-support downloading... core-staging downloading... extra-staging downloading... core-testing downloading... core downloading... extra-testing downloading... extra downloading... :: Starting full system upgrade... there is nothing to do ==> Building in chroot for [extra-staging-with-build-support] (i486)... ==> Synchronizing chroot copy [/var/lib/archbuild/extra-staging-with-build-support-i486/root] -> [build]...done ==> Making package: pymol 3.0.0-7.0 (Fri Dec 27 21:23:15 2024) ==> Retrieving sources... -> Found pymol-open-source-3.0.0.tar.gz -> Found pymol.png ==> Validating source files with sha256sums... pymol-open-source-3.0.0.tar.gz ... Passed pymol.png ... Passed gpg: Warning: using insecure memory! ==> Appending keys from archlinux32.gpg... gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! gpg: Warning: using insecure memory! ==> Updating trust database... gpg: Warning: using insecure memory! gpg: next trustdb check due at 2025-01-01 ==> Making package: pymol 3.0.0-7.0 (Fri Dec 27 21:23:24 2024) ==> Checking runtime dependencies... ==> Installing missing dependencies... resolving dependencies... :: There are 2 providers available for libegl: :: Repository extra-staging 1) libglvnd :: Repository extra 2) libglvnd Enter a number (default=1): looking for conflicting packages... warning: dependency cycle detected: warning: harfbuzz will be installed before its freetype2 dependency warning: dependency cycle detected: warning: mesa will be installed before its libglvnd dependency Packages (48) blas-3.12.0-5.0 blosc-1.21.6-1.0 cblas-3.12.0-5.0 default-cursors-3-1.0 glu-9.0.3-2.0 graphite-1:1.3.14-3.3 harfbuzz-7.1.0-1.0 hdf5-1.14.4.3-2.0 lapack-3.12.0-5.0 libaec-1.1.3-1.0 libdrm-2.4.124-1.0 libedit-20240517_3.1-1.0 libglvnd-1.7.0-1.1 libomxil-bellagio-0.9.3-5.0 libpciaccess-0.18.1-2.0 libpng-1.6.44-1.0 libunwind-1.8.1-3.2 libx11-1.8.10-1.0 libxau-1.0.12-1.0 libxcb-1.17.0-1.0 libxdamage-1.1.6-2.0 libxdmcp-1.1.5-1.0 libxext-1.3.6-1.0 libxfixes-6.0.1-2.0 libxi-1.8.2-1.0 libxrandr-1.5.4-1.0 libxrender-0.9.12-1.0 libxshmfence-1.3.3-1.0 libxxf86vm-1.1.6-1.0 libzip-1.11.1-1.0 llvm-libs-18.1.8-4.1 lm_sensors-1:3.6.0.r41.g31d1f125-3.0 mesa-23.0.3-1.0 mpdecimal-4.0.0-2.153 snappy-1.2.1-2.0 vulkan-icd-loader-1.4.303-1.0 wayland-1.23.1-1.0 xcb-proto-1.17.0-3.0 xorgproto-2024.1-2.0 freeglut-3.4.0-1.0 freetype2-2.13.3-1.0 glew-2.2.0-7.0 glm-1.0.1-1.0 netcdf-4.9.2-3.0 netcdf-cxx-4.3.1-4.0 python-3.13.1-1.0 python-numpy-2.2.0-1.0 tcsh-6.24.13-1.0 Total Installed Size: 408.73 MiB :: Proceed with installation? [Y/n] checking keyring... checking package integrity... loading package files... checking for file conflicts... :: Processing package changes... installing libpng... installing graphite... Optional dependencies for graphite graphite-docs: Documentation installing harfbuzz... Optional dependencies for harfbuzz harfbuzz-utils: utilities installing freetype2... installing xcb-proto... installing xorgproto... installing libxdmcp... installing libxau... installing libxcb... installing libx11... installing libxext... installing libpciaccess... installing libdrm... Optional dependencies for libdrm cairo: needed for modetest tool installing default-cursors... Optional dependencies for default-cursors adwaita-cursors: default cursor theme installing wayland... installing libxxf86vm... installing libxfixes... installing libxdamage... installing libxshmfence... installing libomxil-bellagio... installing libunwind... installing libedit... installing llvm-libs... installing lm_sensors... Optional dependencies for lm_sensors perl: for sensor detection and configuration convert [installed] installing vulkan-icd-loader... Optional dependencies for vulkan-icd-loader vulkan-driver: packaged vulkan driver installing mesa... Optional dependencies for mesa opengl-man-pages: for the OpenGL API man pages mesa-vdpau: for accelerated video playback libva-mesa-driver: for accelerated video playback installing libglvnd... installing glu... installing glew... Optional dependencies for glew libx11: for glxewinfo and visualinfo [installed] installing glm... installing libxi... installing libxrender... installing libxrandr... installing freeglut... installing libaec... installing hdf5... installing snappy... installing blosc... installing libzip... installing netcdf... Optional dependencies for netcdf netcdf-fortran: fortran bindings netcdf-cxx: c++ bindings [pending] installing netcdf-cxx... installing mpdecimal... installing python... Optional dependencies for python python-setuptools: for building Python packages using tooling that is usually bundled with Python python-pip: for installing Python packages using tooling that is usually bundled with Python python-pipx: for installing Python software not packaged on Arch Linux sqlite: for a default database integration [installed] xz: for lzma [installed] tk: for tkinter installing blas... installing cblas... installing lapack... installing python-numpy... Optional dependencies for python-numpy blas-openblas: faster linear algebra installing tcsh... :: Running post-transaction hooks... (1/2) Reloading system manager configuration... Skipped: Current root is not booted. (2/2) Arming ConditionNeedsUpdate... ==> Checking buildtime dependencies... ==> Installing missing dependencies... resolving dependencies... looking for conflicting packages... Packages (24) boost-1.86.0-4.0 boost-libs-1.86.0-4.0 msgpack-cxx-7.0.0-1.0 python-autocommand-2.2.2-6.0 python-fastjsonschema-2.20.0-1.0 python-jaraco.context-5.3.0-1.0 python-jaraco.functools-4.0.2-1.0 python-jaraco.text-4.0.0-1.0 python-more-itertools-10.3.0-1.0 python-ordered-set-4.1.0-5.1 python-packaging-24.2-1.0 python-platformdirs-4.3.6-1.0 python-pyproject-hooks-1.2.0-1.0 python-tomli-2.0.1-4.1 python-trove-classifiers-2024.10.21.16-1.0 python-validate-pyproject-0.22-1.0 desktop-file-utils-0.28-1.0 gendesk-1.0.9-3.1 mmtf-cpp-1.1.0-2.0 msgpack-c-6.1.0-2.0 python-build-1.2.2-1.0 python-installer-0.7.0-8.2 python-setuptools-1:69.5.1-1.1 python-wheel-0.45.0-1.0 Total Installed Size: 196.75 MiB :: Proceed with installation? [Y/n] checking keyring... checking package integrity... loading package files... checking for file conflicts... :: Processing package changes... installing desktop-file-utils... installing gendesk... installing boost-libs... Optional dependencies for boost-libs openmpi: for mpi support installing boost... Optional dependencies for boost python: for python bindings [installed] installing msgpack-cxx... installing mmtf-cpp... installing msgpack-c... installing python-packaging... installing python-pyproject-hooks... installing python-build... installing python-installer... installing python-wheel... Optional dependencies for python-wheel python-keyring: for wheel.signatures python-xdg: for wheel.signatures python-setuptools: for legacy bdist_wheel subcommand [pending] installing python-more-itertools... installing python-jaraco.functools... installing python-jaraco.context... installing python-autocommand... installing python-jaraco.text... Optional dependencies for python-jaraco.text python-inflect: for show-newlines script installing python-ordered-set... installing python-platformdirs... installing python-tomli... installing python-fastjsonschema... installing python-trove-classifiers... installing python-validate-pyproject... installing python-setuptools... :: Running post-transaction hooks... (1/1) Arming ConditionNeedsUpdate... ==> Retrieving sources... -> Found pymol-open-source-3.0.0.tar.gz -> Found pymol.png ==> WARNING: Skipping all source file integrity checks. ==> Extracting sources... -> Extracting pymol-open-source-3.0.0.tar.gz with bsdtar ==> Starting prepare()... ==> Starting build()... gendesk: error while loading shared libraries: libgo.so.22: cannot open shared object file: No such file or directory ==> ERROR: A failure occurred in build(). Aborting... ==> ERROR: Build failed, check /var/lib/archbuild/extra-staging-with-build-support-i486/build/build used straw: :with_build_support:without_check: build@euronuc-i486